Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs80049124 chr1:200536738 A/C 0 173 15.13 16.13 1.03 KM Plot
PAAD rs80053720 chr11:68482907 C/T 8.79E-10 178 15.57 14.2 2.2 KM Plot
PAAD rs80084673 chr1:200518270 G/C 0 170 15.23 16.13 1.03 KM Plot
PAAD rs8008683 chr14:105471295 A/G 6.17E-5 178 22.85 12.7 15.87 KM Plot
PAAD rs80131789 chr12:130610614 C/T 1.9E-7 171 15.4 20.23 3.17 KM Plot
PAAD rs80237401 chr1:227441012 G/A 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs80260621 chr11:68491095 G/C 8.79E-10 178 15.57 14.2 2.2 KM Plot
PAAD rs80262450 chr18:12818922 G/A 0 177 15.42 16.27 1.03 KM Plot
PAAD rs8026467 chr15:101270405 G/C 2.29E-8 171 4.65 15.13 15.77 KM Plot
PAAD rs80273102 chr11:34773121 G/C 3.06E-6 177 15.67 11.13 3.67 KM Plot
PAAD rs8027724 chr15:101270403 C/T 2.29E-8 171 4.65 15.13 15.77 KM Plot
PAAD rs80297171 chr1:227516320 A/G 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs80309223 chr2:70437241 TA/T 0 172 15.2 17.4 1.03 KM Plot
PAAD rs80311310 chr1:227415803 G/T 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs80313225 chr1:227510751 T/C 3.22E-5 178 15.55 15.43 3.9 KM Plot